Evidence Items¶
The evidence items endpoint allows users to enumerate all of the evidence items present in CIViC as well as retrieve more detailed information on a specific evidence item. This is the endpoint that should be used to obtain a complete listing of every evidence item in CIViC.
Get a list of evidence items¶
This endpoint returns a listing of evidence items in CIViC. This index style endpoint is paginated by default. You can use the count and page parameters or the previous and next links to iterate through all the evidence items.
HTTP Request Format
GET https://civicdb.org/api/evidence_items
Query Parameters
Parameter |
Default |
Description |
|---|---|---|
page |
1 |
Which page of results to return |
count |
25 |
How many evidence items to return on a single page |
Example Request
curl https://civicdb.org/api/evidence_items?count=1
Example Response
{
"_meta": {
"current_page": 1,
"per_page": "1",
"total_pages": 8939,
"total_count": 8939,
"links": {
"next": "https://v1.civicdb.org/api/evidence_items?count=1&page=2",
"previous": null
}
},
"records": [
{
"id": 1,
"name": "EID1",
"description": "JAK2 V617F is not associated with lymphoid leukemia (B-lineage ALL, T-ALL or CLL).",
"disease": {
"id": 3034,
"name": "Lymphoid Leukemia",
"display_name": "Lymphoid Leukemia",
"doid": "1037",
"url": "http://disease-ontology.org/?id=DOID:1037"
},
"drugs": [],
"rating": 4,
"evidence_level": "B",
"evidence_type": "Diagnostic",
"clinical_significance": "Negative",
"evidence_direction": "Supports",
"variant_origin": "Somatic",
"drug_interaction_type": null,
"status": "accepted",
"open_change_count": 0,
"type": "evidence",
"source": {
"id": 51,
"name": "The JAK2V617F activating mutation occurs in chronic myelomonocytic leukemia and acute myeloid leukemia, but not in acute lymphoblastic leukemia or chronic lymphocytic leukemia.",
"citation": "Levine et al., 2005, Blood",
"citation_id": "16081687",
"source_type": "PubMed",
"asco_abstract_id": null,
"source_url": "http://www.ncbi.nlm.nih.gov/pubmed/16081687",
"open_access": true,
"pmc_id": "PMC1895066",
"publication_date": {
"year": 2005,
"month": 11,
"day": 15
},
"journal": "Blood",
"full_journal_title": "Blood",
"status": "fully curated",
"is_review": false,
"clinical_trials": []
},
"flagged": false,
"variant_id": 64,
"phenotypes": [],
"updated_at": "2020-11-20T16:18:21.858Z"
}
]
}
Get details for a specific evidence item¶
This endpoint retrieves details about a specific evidence item, given its internal CIViC id.
HTTP Request Format
GET https://civicdb.org/api/evidence_items/:id
Example Request
curl https://civicdb.org/api/evidence_items/512
Example Response
{
"id": 512,
"name": "EID512",
"description": "Nonsense mutations in SMARCA4 were associated with small cell carcinoma of the ovary, hypercalcemic type in 10/10 tumor samples, and were rarely found in other solid tumor types catalogued by TCGA.",
"disease": {
"id": 253,
"name": "Small-cell Carcinoma Of The Ovary Of Hypercalcemic Type",
"display_name": "Small-cell Carcinoma Of The Ovary Of Hypercalcemic Type",
"doid": "7651",
"url": "http://disease-ontology.org/?id=DOID:7651"
},
"drugs": [],
"rating": 5,
"evidence_level": "B",
"evidence_type": "Diagnostic",
"clinical_significance": "Positive",
"evidence_direction": "Supports",
"variant_origin": "Somatic",
"drug_interaction_type": null,
"status": "accepted",
"open_change_count": 0,
"type": "evidence",
"source": {
"id": 316,
"name": "Recurrent SMARCA4 mutations in small cell carcinoma of the ovary.",
"citation": "Jelinic et al., 2014, Nat. Genet.",
"citation_id": "24658004",
"source_type": "PubMed",
"asco_abstract_id": null,
"source_url": "http://www.ncbi.nlm.nih.gov/pubmed/24658004",
"open_access": null,
"pmc_id": null,
"publication_date": {
"year": 2014,
"month": 5
},
"journal": "Nat. Genet.",
"full_journal_title": "Nature genetics",
"status": "fully curated",
"is_review": false,
"clinical_trials": []
},
"flagged": false,
"variant_id": 217,
"phenotypes": [],
"updated_at": "2015-08-05T18:47:08.046Z",
"assertions": [],
"errors": {},
"lifecycle_actions": {
"submitted": {
"timestamp": "2015-08-05T18:47:08.046Z",
"user": {
"id": 57,
"name": "Martin Jones",
"last_seen_at": "2019-05-24T16:29:42.738Z",
"username": "MartinJones",
"role": "editor",
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"featured_expert": true,
"accepted_license": null,
"signup_complete": null,
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"accepted": {
"timestamp": "2015-08-05T18:47:08.046Z",
"user": {
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"last_seen_at": "2021-05-21T22:15:18.160Z",
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"featured_expert": true,
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"signup_complete": null,
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